3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
6OLF|1|t|A|3717, 6OLF|1|t|A|3718
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_201 not in the Motif Atlas
Homologous match to IL_8C3A_090
Geometric discrepancy: 0.1682
The information below is about IL_8C3A_090
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

6OLF|1|t|U|3675
6OLF|1|t|G|3676
*
6OLF|1|t|U|3716
6OLF|1|t|A|3717
6OLF|1|t|A|3718
6OLF|1|t|A|3719

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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