IL_6OLF_205
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 6OLF|1|t|A|3756, 6OLF|1|t|C|3762, 6OLF|1|t|C|3781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_205 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.2202
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6OLF|1|t|C|3752
6OLF|1|t|C|3753
6OLF|1|t|A|3754
6OLF|1|t|A|3755
6OLF|1|t|A|3756
6OLF|1|t|U|3757
6OLF|1|t|G|3758
6OLF|1|t|C|3759
6OLF|1|t|C|3760
6OLF|1|t|U|3761
6OLF|1|t|C|3762
6OLF|1|t|G|3763
*
6OLF|1|t|C|3779
6OLF|1|t|G|3780
6OLF|1|t|C|3781
6OLF|1|t|G|3782
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain o
- 60S ribosomal protein L41
- Chain u
- Transfer RNA; tRNA
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