3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUGAGGC*GCUC
Length
11 nucleotides
Bulged bases
6OLF|1|t|G|4054, 6OLF|1|t|C|4124, 6OLF|1|t|U|4125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_211 not in the Motif Atlas
Homologous match to IL_5TBW_096
Geometric discrepancy: 0.2269
The information below is about IL_5TBW_096
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74114.1
Basepair signature
cWW-cWS-cWW-L-R
Number of instances in this motif group
2

Unit IDs

6OLF|1|t|G|4052
6OLF|1|t|U|4053
6OLF|1|t|G|4054
6OLF|1|t|A|4055
6OLF|1|t|G|4056
6OLF|1|t|G|4057
6OLF|1|t|C|4058
*
6OLF|1|t|G|4123
6OLF|1|t|C|4124
6OLF|1|t|U|4125
6OLF|1|t|C|4126

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain D
5.8S ribosomal RNA; 5.8S rRNA
Chain I
60S ribosomal protein L7a
Chain Y
60S ribosomal protein L23a

Coloring options:


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