IL_6OLF_234

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6OLF|1|t|A|4670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_234 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2473

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OLF|1|t|G|4642
6OLF|1|t|A|4643
6OLF|1|t|U|4644
6OLF|1|t|U|4645
6OLF|1|t|A|4646
6OLF|1|t|U|4647
*
6OLF|1|t|A|4667
6OLF|1|t|G|4668
6OLF|1|t|A|4669
6OLF|1|t|A|4670
6OLF|1|t|U|4671
6OLF|1|t|C|4672

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain P

60S ribosomal protein L13a

Chain n

60S ribosomal protein L40