IL_6OLF_250

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

6OLF|1|t|A|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_250 not in the Motif Atlas

Geometric match to IL_7Y2B_001

Geometric discrepancy: 0.3257

The information below is about IL_7Y2B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6OLF|1|D|G|24
6OLF|1|D|G|25
6OLF|1|D|C|26
*
6OLF|1|t|G|342
6OLF|1|t|A|343
6OLF|1|t|C|344
6OLF|1|t|C|345

Current chains

Chain D

5.8S ribosomal RNA

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Z

60S ribosomal protein L26