IL_6OLF_274
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAUCGG*CCAUGAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_274 not in the Motif Atlas
- Geometric match to IL_4WF9_119
- Geometric discrepancy: 0.2914
- The information below is about IL_4WF9_119
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00087.1
- Basepair signature
- cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
6OLF|1|S2|G|1604
6OLF|1|S2|G|1605
6OLF|1|S2|G|1606
6OLF|1|S2|A|1607
6OLF|1|S2|U|1608
6OLF|1|S2|C|1609
6OLF|1|S2|G|1610
6OLF|1|S2|G|1611
*
6OLF|1|S2|C|1628
6OLF|1|S2|C|1629
6OLF|1|S2|A|1630
6OLF|1|S2|U|1631
6OLF|1|S2|G|1632
6OLF|1|S2|A|1633
6OLF|1|S2|A|1634
6OLF|1|S2|C|1635
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
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