3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGGAUCGG*CCAUGAAC
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_274 not in the Motif Atlas
Geometric match to IL_4WF9_119
Geometric discrepancy: 0.2914
The information below is about IL_4WF9_119
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_00087.1
Basepair signature
cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
Number of instances in this motif group
1

Unit IDs

6OLF|1|S2|G|1604
6OLF|1|S2|G|1605
6OLF|1|S2|G|1606
6OLF|1|S2|A|1607
6OLF|1|S2|U|1608
6OLF|1|S2|C|1609
6OLF|1|S2|G|1610
6OLF|1|S2|G|1611
*
6OLF|1|S2|C|1628
6OLF|1|S2|C|1629
6OLF|1|S2|A|1630
6OLF|1|S2|U|1631
6OLF|1|S2|G|1632
6OLF|1|S2|A|1633
6OLF|1|S2|A|1634
6OLF|1|S2|C|1635

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SF
40S ribosomal protein S5
Chain SP
40S ribosomal protein S15
Chain SS
40S ribosomal protein S18
Chain ST
40S ribosomal protein S19

Coloring options:


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