IL_6OLF_280
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUCC*GGCUAC
- Length
- 11 nucleotides
- Bulged bases
- 6OLF|1|t|U|1285, 6OLF|1|t|A|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_280 not in the Motif Atlas
- Geometric match to IL_8C3A_102
- Geometric discrepancy: 0.3918
- The information below is about IL_8C3A_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OLF|1|t|G|437
6OLF|1|t|G|438
6OLF|1|t|U|439
6OLF|1|t|C|440
6OLF|1|t|C|441
*
6OLF|1|t|G|1282
6OLF|1|t|G|1283
6OLF|1|t|C|1284
6OLF|1|t|U|1285
6OLF|1|t|A|1286
6OLF|1|t|C|1287
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain f
- 60S ribosomal protein L32
- Chain g
- 60S ribosomal protein L35a
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