IL_6OLF_303

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCU*GGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_303 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.2493

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

6OLF|1|t|U|4600
6OLF|1|t|G|4601
6OLF|1|t|C|4602
6OLF|1|t|U|4603
*
6OLF|1|t|G|4620
6OLF|1|t|G|4621
6OLF|1|t|G|4622
6OLF|1|t|G|4623

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain X

60S ribosomal protein L24

Chain e

60S ribosomal protein L31