IL_6OLG_005
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLG_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1916
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OLG|1|A2|C|30
6OLG|1|A2|U|31
6OLG|1|A2|G|32
6OLG|1|A2|A|33
6OLG|1|A2|A|34
6OLG|1|A2|U|35
6OLG|1|A2|U|36
6OLG|1|A2|U|37
*
6OLG|1|A2|A|44
6OLG|1|A2|U|45
6OLG|1|A2|U|46
6OLG|1|A2|A|47
6OLG|1|A2|G|48
6OLG|1|A2|U|49
6OLG|1|A2|C|50
6OLG|1|A2|A|51
6OLG|1|A2|G|52
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13
- Chain AN
- 60S ribosomal protein L15
- Chain Aa
- 60S ribosomal protein L27a
- Chain Aj
- 60S ribosomal protein L37
- Chain Ao
- 60S ribosomal protein L36a
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