IL_6OLG_078

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_078 not in the Motif Atlas

Homologous match to IL_8C3A_052

Geometric discrepancy: 0.325

The information below is about IL_8C3A_052

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_84902.1

Basepair signature

cWW-L-cWW-L-L-R-cHH

Number of instances in this motif group

2

Unit IDs

6OLG|1|A2|C|1892
6OLG|1|A2|G|1893
6OLG|1|A2|C|1894
6OLG|1|A2|C|1895
6OLG|1|A2|C|1896
6OLG|1|A2|G|1897
6OLG|1|A2|A|1898
6OLG|1|A2|U|1899
*
6OLG|1|A2|G|2045
6OLG|1|A2|G|2046

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L7

Chain AO

60S ribosomal protein L13a

Chain AS

60S ribosomal protein L18a

Chain Af

60S ribosomal protein L35a