IL_6OLG_091

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_091 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1417

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6OLG|1|A2|G|2337
6OLG|1|A2|U|2338
6OLG|1|A2|A|2339
6OLG|1|A2|G|2340
6OLG|1|A2|U|2341
6OLG|1|A2|A|2342
6OLG|1|A2|G|2343
*
6OLG|1|A2|C|3829
6OLG|1|A2|G|3830
6OLG|1|A2|A|3831
6OLG|1|A2|A|3832
6OLG|1|A2|A|3833
6OLG|1|A2|C|3834

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AP

60S ribosomal protein L17