IL_6OLG_104

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_104 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.1519

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6OLG|1|A2|A|2811
6OLG|1|A2|A|2812
6OLG|1|A2|C|2813
6OLG|1|A2|A|2814
6OLG|1|A2|A|2815
6OLG|1|A2|U|2816
6OLG|1|A2|G|2817
*
6OLG|1|A2|C|3821
6OLG|1|A2|U|3822
6OLG|1|A2|A|3823
6OLG|1|A2|U|3824

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17

Chain Ad

60S ribosomal protein L31