IL_6OLG_135

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_135 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2282

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6OLG|1|A2|U|4257
6OLG|1|A2|U|4258
6OLG|1|A2|G|4259
6OLG|1|A2|A|4260
*
6OLG|1|A2|U|4274
6OLG|1|A2|A|4275
6OLG|1|A2|C|4276
6OLG|1|A2|A|4277

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AQ

60S ribosomal protein L18

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29

Chain Ao

60S ribosomal protein L36a