IL_6OLG_150

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6OLG|1|A2|C|4682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_150 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1587

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6OLG|1|A2|C|4544
6OLG|1|A2|C|4545
6OLG|1|A2|A|4546
6OLG|1|A2|U|4547
*
6OLG|1|A2|A|4679
6OLG|1|A2|G|4680
6OLG|1|A2|G|4681
6OLG|1|A2|C|4682
6OLG|1|A2|G|4683

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L13a