IL_6OLG_209

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_209 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1877

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6OLG|1|B1|G|665
6OLG|1|B1|U|666
6OLG|1|B1|U|667
6OLG|1|B1|A|668
6OLG|1|B1|A|669
6OLG|1|B1|A|670
6OLG|1|B1|A|671
*
6OLG|1|B1|U|1161
6OLG|1|B1|C|1162

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BX

40S ribosomal protein S23

Chain Ba

40S ribosomal protein S26