IL_6OLG_222

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_222 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1315

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6OLG|1|B1|G|942
6OLG|1|B1|U|943
6OLG|1|B1|A|944
6OLG|1|B1|U|945
*
6OLG|1|B1|A|981
6OLG|1|B1|G|982
6OLG|1|B1|A|983
6OLG|1|B1|C|984

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain BB

40S ribosomal protein S3a

Chain BO

40S ribosomal protein S14