IL_6OLG_225
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLG_225 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.1472
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6OLG|1|B1|C|1047
6OLG|1|B1|G|1048
6OLG|1|B1|A|1049
6OLG|1|B1|A|1050
6OLG|1|B1|G|1051
*
6OLG|1|B1|C|1067
6OLG|1|B1|G|1068
6OLG|1|B1|U|1069
6OLG|1|B1|A|1070
6OLG|1|B1|G|1071
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- 60S ribosomal protein L8
- Chain BO
- 40S ribosomal protein S14
- Chain Ba
- 40S ribosomal protein S26
Coloring options: