IL_6OLG_233

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6OLG|1|B1|C|1215, 6OLG|1|B1|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_233 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1655

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6OLG|1|B1|A|1214
6OLG|1|B1|C|1215
6OLG|1|B1|C|1216
6OLG|1|B1|A|1217
*
6OLG|1|B1|U|1681
6OLG|1|B1|C|1682
6OLG|1|B1|C|1683
6OLG|1|B1|C|1684
6OLG|1|B1|U|1685

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BQ

40S ribosomal protein S16

Chain Bc

40S ribosomal protein S28

Chain Bv

Transfer RNA; tRNA