IL_6OLI_188

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_188 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0843

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6OLI|1|t|G|2337
6OLI|1|t|U|2338
6OLI|1|t|A|2339
6OLI|1|t|G|2340
6OLI|1|t|U|2341
6OLI|1|t|A|2342
6OLI|1|t|G|2343
*
6OLI|1|t|C|3829
6OLI|1|t|G|3830
6OLI|1|t|A|3831
6OLI|1|t|A|3832
6OLI|1|t|A|3833
6OLI|1|t|C|3834

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

60S ribosomal protein L17