IL_6OLI_195

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_195 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.2446

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6OLI|1|t|C|2568
6OLI|1|t|G|2569
6OLI|1|t|A|2570
6OLI|1|t|U|2571
6OLI|1|t|C|2572
*
6OLI|1|t|G|2731
6OLI|1|t|G|2732
6OLI|1|t|G|2733
6OLI|1|t|A|2734
6OLI|1|t|G|2735

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain a

60S ribosomal protein L27

Chain h

60S ribosomal protein L34