IL_6OLI_211

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6OLI|1|t|A|3717, 6OLI|1|t|A|3718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_211 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1069

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6OLI|1|t|U|3675
6OLI|1|t|G|3676
*
6OLI|1|t|U|3716
6OLI|1|t|A|3717
6OLI|1|t|A|3718
6OLI|1|t|A|3719

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA