IL_6OLI_271
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6OLI|1|S2|A|1284, 6OLI|1|S2|G|1285, 6OLI|1|S2|G|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLI_271 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.4831
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6OLI|1|S2|G|1281
6OLI|1|S2|A|1282
6OLI|1|S2|C|1283
6OLI|1|S2|A|1284
6OLI|1|S2|G|1285
6OLI|1|S2|G|1286
6OLI|1|S2|A|1287
6OLI|1|S2|U|1288
6OLI|1|S2|U|1289
6OLI|1|S2|G|1290
*
6OLI|1|S2|C|1309
6OLI|1|S2|U|1310
6OLI|1|S2|C|1311
6OLI|1|S2|G|1312
6OLI|1|S2|A|1313
6OLI|1|S2|U|1314
6OLI|1|S2|U|1315
6OLI|1|S2|C|1316
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SM
- 40S ribosomal protein S12
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- 40S ribosomal protein S27a
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