IL_6OLZ_149

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_149 not in the Motif Atlas

Homologous match to IL_8C3A_125

Geometric discrepancy: 0.1518

The information below is about IL_8C3A_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6OLZ|1|A2|C|4558
6OLZ|1|A2|U|4559
6OLZ|1|A2|C|4560
6OLZ|1|A2|A|4561
6OLZ|1|A2|G|4562
6OLZ|1|A2|U|4563
6OLZ|1|A2|A|4564
6OLZ|1|A2|C|4565
*
6OLZ|1|A2|G|4570
6OLZ|1|A2|G|4571
6OLZ|1|A2|A|4572
6OLZ|1|A2|A|4573
6OLZ|1|A2|C|4574
6OLZ|1|A2|C|4575
6OLZ|1|A2|G|4576

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AH

60S ribosomal protein L9

Chain AV

60S ribosomal protein L23