IL_6OM0_029
3D structure
- PDB id
- 6OM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUU*ACCUCGGG
- Length
- 12 nucleotides
- Bulged bases
- 6OM0|1|S2|U|305, 6OM0|1|S2|G|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM0_029 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.3376
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
6OM0|1|S2|C|216
6OM0|1|S2|A|217
6OM0|1|S2|U|218
6OM0|1|S2|U|219
*
6OM0|1|S2|A|302
6OM0|1|S2|C|303
6OM0|1|S2|C|304
6OM0|1|S2|U|305
6OM0|1|S2|C|306
6OM0|1|S2|G|307
6OM0|1|S2|G|308
6OM0|1|S2|G|309
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SI
- 40S ribosomal protein S8
Coloring options: