IL_6OM6_044

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6OM6|1|1|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_044 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2368

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6OM6|1|1|G|1059
6OM6|1|1|U|1060
6OM6|1|1|U|1061
6OM6|1|1|G|1062
*
6OM6|1|1|C|1076
6OM6|1|1|A|1077
6OM6|1|1|U|1078
6OM6|1|1|C|1079

Current chains

Chain 1

23S ribosomal RNA

Nearby chains