IL_6OM6_088

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_088 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5955

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6OM6|1|1|G|2110
6OM6|1|1|U|2111
6OM6|1|1|G|2112
6OM6|1|1|U|2113
6OM6|1|1|A|2114
6OM6|1|1|G|2115
6OM6|1|1|G|2116
6OM6|1|1|A|2117
6OM6|1|1|U|2118
6OM6|1|1|A|2119
6OM6|1|1|G|2120
6OM6|1|1|G|2121
*
6OM6|1|1|C|2177
6OM6|1|1|C|2178
6OM6|1|1|C|2179

Current chains

Chain 1

23S ribosomal RNA

Nearby chains