IL_6OM6_090

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6OM6|1|1|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_090 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2996

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6OM6|1|1|C|2129
6OM6|1|1|U|2130
6OM6|1|1|U|2131
6OM6|1|1|U|2132
6OM6|1|1|G|2133
6OM6|1|1|A|2134
6OM6|1|1|A|2135
6OM6|1|1|G|2136
*
6OM6|1|1|U|2155
6OM6|1|1|G|2156
6OM6|1|1|G|2157
6OM6|1|1|A|2158
6OM6|1|1|G|2159

Current chains

Chain 1

23S ribosomal RNA

Nearby chains