3D structure

PDB id
6OM6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6OM6|1|1|U|2132
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OM6_090 not in the Motif Atlas
Homologous match to IL_3U4M_004
Geometric discrepancy: 0.2996
The information below is about IL_3U4M_004
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90775.1
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
23

Unit IDs

6OM6|1|1|C|2129
6OM6|1|1|U|2130
6OM6|1|1|U|2131
6OM6|1|1|U|2132
6OM6|1|1|G|2133
6OM6|1|1|A|2134
6OM6|1|1|A|2135
6OM6|1|1|G|2136
*
6OM6|1|1|U|2155
6OM6|1|1|G|2156
6OM6|1|1|G|2157
6OM6|1|1|A|2158
6OM6|1|1|G|2159

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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