IL_6OM6_138

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6OM6|1|2|A|532, 6OM6|1|2|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_138 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3395

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6OM6|1|2|G|515
6OM6|1|2|PSU|516
6OM6|1|2|G|517
6OM6|1|2|C|518
6OM6|1|2|C|519
6OM6|1|2|A|520
6OM6|1|2|G|521
*
6OM6|1|2|C|528
6OM6|1|2|G|529
6OM6|1|2|G|530
6OM6|1|2|U|531
6OM6|1|2|A|532
6OM6|1|2|A|533
6OM6|1|2|U|534
6OM6|1|2|A|535
6OM6|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12