IL_6OM6_148

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6OM6|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_148 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1041

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6OM6|1|2|U|684
6OM6|1|2|G|685
6OM6|1|2|U|686
6OM6|1|2|A|687
6OM6|1|2|G|688
*
6OM6|1|2|C|699
6OM6|1|2|G|700
6OM6|1|2|U|701
6OM6|1|2|A|702
6OM6|1|2|G|703
6OM6|1|2|A|704
6OM6|1|2|G|705
6OM6|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11