IL_6OM7_226

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6OM7|1|t|G|4484, 6OM7|1|t|A|4485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM7_226 not in the Motif Atlas

Homologous match to IL_5TBW_108

Geometric discrepancy: 0.1409

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OM7|1|t|C|4418
6OM7|1|t|U|4419
6OM7|1|t|C|4420
*
6OM7|1|t|G|4482
6OM7|1|t|U|4483
6OM7|1|t|G|4484
6OM7|1|t|A|4485
6OM7|1|t|G|4486

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

60S ribosomal protein L23