IL_6OM7_288
3D structure
- PDB id
- 6OM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUCAGUAC*GGAACCGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM7_288 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.3701
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6OM7|1|t|G|4557
6OM7|1|t|C|4558
6OM7|1|t|U|4559
6OM7|1|t|C|4560
6OM7|1|t|A|4561
6OM7|1|t|G|4562
6OM7|1|t|U|4563
6OM7|1|t|A|4564
6OM7|1|t|C|4565
*
6OM7|1|t|G|4570
6OM7|1|t|G|4571
6OM7|1|t|A|4572
6OM7|1|t|A|4573
6OM7|1|t|C|4574
6OM7|1|t|C|4575
6OM7|1|t|G|4576
6OM7|1|t|C|4577
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain J
- 60S ribosomal protein L9
- Chain W
- 60S ribosomal protein L23
- Chain n
- 60S ribosomal protein L40
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