IL_6OPE_143

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6OPE|1|RA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_143 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5184

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6OPE|1|RA|C|2129
6OPE|1|RA|U|2130
6OPE|1|RA|G|2131
6OPE|1|RA|U|2132
6OPE|1|RA|G|2133
6OPE|1|RA|A|2134
6OPE|1|RA|A|2135
6OPE|1|RA|C|2136
*
6OPE|1|RA|G|2155
6OPE|1|RA|G|2156
6OPE|1|RA|G|2157
6OPE|1|RA|A|2158
6OPE|1|RA|G|2159

Current chains

Chain RA

23S rRNA

Nearby chains