IL_6OPE_199

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6OPE|1|XA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_199 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0934

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OPE|1|XA|G|662
6OPE|1|XA|A|663
6OPE|1|XA|G|664
6OPE|1|XA|A|665
6OPE|1|XA|G|666
*
6OPE|1|XA|U|740
6OPE|1|XA|G|741
6OPE|1|XA|G|742
6OPE|1|XA|U|743

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XO

30S ribosomal protein S15

Chain XR

30S ribosomal protein S18