IL_6ORL_128
3D structure
- PDB id
- 6ORL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RF1 pre-accommodated 70S complex at 24 ms
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6ORL|1|2|A|532, 6ORL|1|2|U|534, 6ORL|1|2|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ORL_128 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3937
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ORL|1|2|G|515
6ORL|1|2|PSU|516
6ORL|1|2|G|517
6ORL|1|2|C|518
6ORL|1|2|C|519
6ORL|1|2|A|520
6ORL|1|2|G|521
*
6ORL|1|2|C|528
6ORL|1|2|G|529
6ORL|1|2|G|530
6ORL|1|2|U|531
6ORL|1|2|A|532
6ORL|1|2|A|533
6ORL|1|2|U|534
6ORL|1|2|A|535
6ORL|1|2|C|536
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA
- Chain A
- Peptide chain release factor 1
- Chain h
- 30S ribosomal protein S3
- Chain q
- 30S ribosomal protein S12
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