IL_6ORL_179

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUC*GAAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_179 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3562

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ORL|1|1|C|848
6ORL|1|1|A|849
6ORL|1|1|U|850
6ORL|1|1|C|851
*
6ORL|1|1|G|926
6ORL|1|1|A|927
6ORL|1|1|A|928
6ORL|1|1|U|929
6ORL|1|1|G|930

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30