IL_6ORL_196

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAA*UGCC

Length

9 nucleotides

Bulged bases

6ORL|1|2|A|130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_196 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.2044

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ORL|1|2|G|127
6ORL|1|2|G|128
6ORL|1|2|A|129
6ORL|1|2|A|130
6ORL|1|2|A|131
*
6ORL|1|2|U|231
6ORL|1|2|G|232
6ORL|1|2|C|233
6ORL|1|2|C|234

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17

Chain y

30S ribosomal protein S20