IL_6OSI_023

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6OSI|1|QA|A|532, 6OSI|1|QA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_023 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2134

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6OSI|1|QA|G|515
6OSI|1|QA|U|516
6OSI|1|QA|G|517
6OSI|1|QA|C|518
6OSI|1|QA|C|519
6OSI|1|QA|A|520
6OSI|1|QA|G|521
*
6OSI|1|QA|C|528
6OSI|1|QA|G|529
6OSI|1|QA|G|530
6OSI|1|QA|U|531
6OSI|1|QA|A|532
6OSI|1|QA|A|533
6OSI|1|QA|U|534
6OSI|1|QA|A|535
6OSI|1|QA|C|536

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12