IL_6OSI_042

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CGUC*GUCUG

Length

9 nucleotides

Bulged bases

6OSI|1|QA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_042 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3617

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OSI|1|QA|C|1060
6OSI|1|QA|G|1061
6OSI|1|QA|U|1062
6OSI|1|QA|C|1063
*
6OSI|1|QA|G|1193
6OSI|1|QA|U|1194
6OSI|1|QA|C|1195
6OSI|1|QA|U|1196
6OSI|1|QA|G|1197

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QE

30S ribosomal protein S5

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z