IL_6OSI_346

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGGAGUACG*UGAAACU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_346 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3546

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6OSI|1|QA|G|886
6OSI|1|QA|G|887
6OSI|1|QA|G|888
6OSI|1|QA|A|889
6OSI|1|QA|G|890
6OSI|1|QA|U|891
6OSI|1|QA|A|892
6OSI|1|QA|C|893
6OSI|1|QA|G|894
*
6OSI|1|QA|U|905
6OSI|1|QA|G|906
6OSI|1|QA|A|907
6OSI|1|QA|A|908
6OSI|1|QA|A|909
6OSI|1|QA|C|910
6OSI|1|QA|U|911

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12