IL_6OSI_362

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

UGG*UCAGCA

Length

9 nucleotides

Bulged bases

6OSI|1|XA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_362 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.3411

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6OSI|1|XA|U|1056
6OSI|1|XA|G|1057
6OSI|1|XA|G|1058
*
6OSI|1|XA|U|1199
6OSI|1|XA|C|1200
6OSI|1|XA|A|1201
6OSI|1|XA|G|1202
6OSI|1|XA|C|1203
6OSI|1|XA|A|1204

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14 type Z