3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
6OSK|1|1|A|1801, 6OSK|1|1|C|1816, 6OSK|1|1|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OSK_067 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.0745
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

6OSK|1|1|U|1798
6OSK|1|1|G|1799
6OSK|1|1|C|1800
6OSK|1|1|A|1801
6OSK|1|1|A|1802
6OSK|1|1|A|1803
6OSK|1|1|C|1804
*
6OSK|1|1|G|1813
6OSK|1|1|G|1814
6OSK|1|1|A|1815
6OSK|1|1|C|1816
6OSK|1|1|G|1817
6OSK|1|1|U|1818
6OSK|1|1|A|1819
6OSK|1|1|U|1820
6OSK|1|1|A|1821

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L2

Coloring options:


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