IL_6OST_043

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6OST|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_043 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1406

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6OST|1|1|C|1208
6OST|1|1|U|1209
6OST|1|1|G|1210
6OST|1|1|C|1211
6OST|1|1|G|1212
6OST|1|1|A|1213
6OST|1|1|A|1214
6OST|1|1|G|1215
*
6OST|1|1|U|1234
6OST|1|1|G|1235
6OST|1|1|G|1236
6OST|1|1|A|1237
6OST|1|1|G|1238

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20