IL_6OST_101

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_101 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1086

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OST|1|1|G|2737
6OST|1|1|A|2738
6OST|1|1|U|2739
6OST|1|1|A|2740
6OST|1|1|A|2741
6OST|1|1|G|2742
*
6OST|1|1|C|2762
6OST|1|1|G|2763
6OST|1|1|A|2764
6OST|1|1|A|2765
6OST|1|1|A|2766
6OST|1|1|C|2767

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36