IL_6OST_127

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_127 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1846

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6OST|1|2|G|450
6OST|1|2|A|451
6OST|1|2|A|452
6OST|1|2|G|453
6OST|1|2|G|454
6OST|1|2|G|455
*
6OST|1|2|C|477
6OST|1|2|A|478
6OST|1|2|U|479
6OST|1|2|U|480
6OST|1|2|G|481
6OST|1|2|A|482
6OST|1|2|C|483

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16