IL_6OST_130

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6OST|1|2|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_130 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.175

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6OST|1|2|C|569
6OST|1|2|G|570
6OST|1|2|U|571
6OST|1|2|A|572
6OST|1|2|A|573
6OST|1|2|A|574
6OST|1|2|G|575
*
6OST|1|2|C|880
6OST|1|2|G|881

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17