IL_6OST_142

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_142 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.117

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6OST|1|2|G|887
6OST|1|2|G|888
6OST|1|2|A|889
6OST|1|2|G|890
6OST|1|2|U|891
6OST|1|2|A|892
6OST|1|2|C|893
6OST|1|2|G|894
*
6OST|1|2|U|905
6OST|1|2|A|906
6OST|1|2|A|907
6OST|1|2|A|908
6OST|1|2|A|909
6OST|1|2|C|910

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12