IL_6OST_158

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

6OST|1|2|U|1286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_158 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.1812

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

6OST|1|2|U|1247
6OST|1|2|A|1248
6OST|1|2|C|1249
6OST|1|2|A|1250
6OST|1|2|A|1251
6OST|1|2|A|1252
6OST|1|2|G|1253
*
6OST|1|2|C|1284
6OST|1|2|A|1285
6OST|1|2|U|1286
6OST|1|2|A|1287
6OST|1|2|A|1288
6OST|1|2|A|1289
6OST|1|2|G|1290

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9

Chain o

30S ribosomal protein S10