IL_6OST_181

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_181 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1419

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6OST|1|1|U|1851
6OST|1|1|U|1852
6OST|1|1|A|1853
6OST|1|1|A|1854
6OST|1|1|U|1855
6OST|1|1|U|1856
6OST|1|1|G|1857
6OST|1|1|A|1858
6OST|1|1|U|1859
6OST|1|1|G|1860
*
6OST|1|1|U|1882
6OST|1|1|U|1883
6OST|1|1|G|1884
6OST|1|1|A|1885
6OST|1|1|U|1886
6OST|1|1|C|1887
6OST|1|1|G|1888
6OST|1|1|A|1889
6OST|1|1|A|1890
6OST|1|1|G|1891

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains