IL_6OT3_035

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6OT3|1|1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OT3_035 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1287

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6OT3|1|1|U|1018
6OT3|1|1|U|1019
6OT3|1|1|A|1020
6OT3|1|1|A|1021
6OT3|1|1|G|1022
6OT3|1|1|U|1023
6OT3|1|1|G|1024
*
6OT3|1|1|C|1140
6OT3|1|1|U|1141
6OT3|1|1|A|1142
6OT3|1|1|A|1143
6OT3|1|1|A|1144

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36