3D structure

PDB id
6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound Release complex 70S at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6OT3|1|2|A|532, 6OT3|1|2|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OT3_127 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.3593
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6OT3|1|2|G|515
6OT3|1|2|PSU|516
6OT3|1|2|G|517
6OT3|1|2|C|518
6OT3|1|2|C|519
6OT3|1|2|A|520
6OT3|1|2|G|521
*
6OT3|1|2|C|528
6OT3|1|2|G|529
6OT3|1|2|G|530
6OT3|1|2|U|531
6OT3|1|2|A|532
6OT3|1|2|A|533
6OT3|1|2|U|534
6OT3|1|2|A|535
6OT3|1|2|C|536

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 4
mRNA
Chain A
Peptide chain release factor 2
Chain h
30S ribosomal protein S3
Chain i
30S ribosomal protein S4
Chain q
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1588 s